Bioprospecting and Evaluation of Lytic Bacteriophages against Extensively Drug-Resistant Salmonella Enterica Serovar Typhi from Diverse Biological Matrices

Authors

  • Darakhshan Guhar Department of Microbiology, Jinnah University for Women (JUW), Nazimabad, Karachi, Pakistan Author
  • Saifullah Khan Centres of Excellence in Science & Applied Technologies (CESAT), Islamabad, Pakistan Author
  • Sayyada Ghufrana Nadeem Department of Microbiology, Jinnah University for Women (JUW), Nazimabad, Karachi, Pakistan Author

DOI:

https://doi.org/10.31580/pjmls.v9i1.3478

Keywords:

Biological matrices, Double-layer agar overlay plaque assay, Extensively drug-resistant, Lytic phages, Salmonella enteric, Serovar typhi, Typhoid

Abstract

Extensively drug-resistant (XDR) Salmonella enterica serovar Typhi has posed a public health challenge globally and predominantly in LMIC countries. Pakistan serves as a country with the highest burden of typhoid, and Karachi is known as an epicenter. Lytic Phages are the natural killers of bacteria and can be exploited for the development of countermeasures. This study aimed to explore various biological matrices for the isolation of lytic phages against XDR Salmonella enterica serovar Typhi. It is also intended to evaluate the isolated phages on the basis of their plaque size, reproducibility in the laboratory environment, phage titers and stability during storage in a controlled environment. A total of 45 environmental samples were collected, comprising 13 sewage, 14 drainage water, 8 poultry waste, 4 marine samples and 6 tap water samples. Sequential enrichment, centrifugation, membrane filtration, and the double-layer agar overlay plaque assay were applied. The bacterial host (ST-1) used in this study was identified and characterized as XDR Salmonella enterica ssp. enterica through the MALDI-TOF MS, Vitek 2 compact system and serological test. Most of the sewage samples, indeed, hospital-associated sewage, yielded phages with significant titers in a reproducible manner. We also found phages in poultry waste, drainage, and marine water, whereas no phages were isolated from tap water. Our findings provide ecological and microbiological insight into various biological matrices for specific lytic phages. In conclusion, hospital-associated sewage at Karachi, Pakistan, is a good source of phages. Our results indirectly verify the prevalence of XDR S. typhi in the community.

References

Kasman LM, Porter LD. Bacteriophages. InStatPearls. 2022. StatPearls Publishing.

2. Han Y, Gao C, Liang Y, McMinn A, Wang M. Diversity and ecological roles of Deep-Sea viruses. Ocean-Land-Atmosphere Research. 2024;3:0067.

3. Naghavi M, Vollset SE, Ikuta KS, Swetschinski LR, Gray AP, Wool EE, Aguilar GR, Mestrovic T, Smith G, Han C, Hsu RL. Global burden of bacterial antimicrobial resistance 1990–2021: a systematic analysis with forecasts to 2050. The Lancet. 2024;404(10459):1199-226.

4. World Health Organization. Deaths due to AMR estimated to reach 10 million people by 2050; Ministry of Health and WHO launch national strategy [Internet]. Jakarta: World Health Organization; 2024.

5. Business Recorder. AMR is now among leading causes of mortality, antibiotic resistance threatens public health in Pakistan [Internet]. Karachi: Business Recorder; 2024.

6. Butt MH, Saleem A, Javed SO, Ullah I, Rehman MU, Islam N, Tahir MA, Malik T, Hafeez S, Misbah S. Rising XDR-typhoid fever cases in Pakistan: are we heading back to the pre-antibiotic era?. Frontiers in public health. 2022;9:794868.

7. Rasheed F, Saeed M, Alikhan NF, Baker D, Khurshid M, Ainsworth EV, Turner AK, Imran AA, Rasool MH, Saqalein M, Nisar MA. Emergence of resistance to fluoroquinolones and third-generation cephalosporins in Salmonella typhi in Lahore, Pakistan. Microorganisms. 2020;8(9):1336.

8. Centers for Disease Control and Prevention. Typhoid and paratyphoid fever. In: CDC Yellow Book 2026: Health information for international travel [Internet]. Atlanta (GA): U.S. Department of Health and Human Services; 2025.

9. World Health Organization. Typhoid fever – Pakistan [Internet]. Geneva: World Health Organization; 2018.

10. Leber AL, Burnham CA, editors. Clinical microbiology procedures handbook, multi-volume. John Wiley & Sons; 2024.

11. Hong K, Bae J, Lee H, Yong D, Cho HW, Kim YA. A head-to-head comparison of five MALDI-TOF mass spectrometry systems for detection of clinically relevant bacteria and fungi, a single center study. Journal of Global Antimicrobial Resistance. 2024;39:37.

12. l’Étoile M. VITEK® 2 Compact system brochure. Marcy-l’Étoile (France): bioMérieux; 2023.

13. World Health Organization. WHO laboratory manual for typhoid and paratyphoid (enteric fever). 2026

14. Blosser S. Clinical and Laboratory Standards Institute CL. Performance standards for antimicrobial susceptibility testing. CLSI M100. 2024.

15. Shaikh OA, Asghar Z, Aftab RM, Amin S, Shaikh G, Nashwan AJ. Antimicrobial resistant strains of Salmonella typhi: The role of illicit antibiotics sales, misuse, and self-medication practices in Pakistan. Journal of infection and public health. 2023;16(10):1591-7.

16. Guillén-Vásquez A, Zumaeta K, Talledo M. Isolation and characterization of FS01, a lytic bacteriophage infecting Salmonella typhimurium. InAnales de Biología. 2025; 47:49-58.

17. Sun Y, Qu Q, Huang Y, Zhou S, Xiang H, Wang W. Isolation, characterization and therapeutic efficacy of lytic bacteriophage ZK22 against Salmonella typhimurium in mice. BMC microbiology. 2025;25(1):39.

18. da Silva KE, Yokoyama T, Naga SR, Maharjan M, Pereira dos Santos PC, Fisher KN, Coulibaly JT, Yang MZ, Nelson EJ, Charles RC, Shafer K. Rapid, low-cost colorimetric detection of Salmonella typhi bacteriophages for environmental surveillance. Mbio. 2025;16(9):e01963-25.

19. Shrestha S, Da Silva KE, Shakya J, Yu AT, Katuwal N, Shrestha R, Shakya M, Shahi SB, Naga SR, LeBoa C, Aiemjoy K. Detection of Salmonella typhi bacteriophages in surface waters as a scalable approach to environmental surveillance. PLoS Neglected Tropical Diseases. 2024;18(2):e0011912.

20. Islam MS, Nime I, Pan F, Wang X. Isolation and characterization of phage ISTP3 for bio-control application against drug-resistant Salmonella. Frontiers in microbiology. 2023;14:1260181.

21. Mirmiran SD, Li X, Li X, Qian P. Isolation and characterization of Salmonella phages for controlling bacterial infections. Frontiers in Veterinary Science. 2025;12:1695255.

22. Artawinata PC, Lorraine S, Waturangi DE. Isolation and characterization of bacteriophages from soil against food spoilage and foodborne pathogenic bacteria. Scientific Reports. 2023;13(1):9282.

23. Yesil M, Huang E, Yang X, Yousef AE. Genomic analysis, culturing optimization, and characterization of Escherichia bacteriophage OSYSP, previously studied as effective pathogen control on fresh produce. Frontiers in Microbiology. 2024;15:1486333.

24. Jo SJ, Lee YM, Cho K, Park SY, Kwon H, Giri SS, Lee SB, Jung WJ, Park JH, Hwang MH, Park DS. Standardization of the agar plate method for bacteriophage production. Antibiotics. 2024;14(1):2.

25. Wiebe KG, Cook BW, Lightly TJ, Court DA, Theriault SS. Investigation into scalable and efficient enterotoxigenic Escherichia coli bacteriophage production. Scientific Reports. 2024;14(1):3618.

26. Cardoso LL, Gaissmaier MS, von Strempel A, Keys T, Matchado MS, Salvado Silva M, Ring D, Slack E, Stecher B. In vitro and in vivo selection and cost of bacteriophage resistance on natural Escherichia coli. Microlife. 2025;6:uqaf017.

27. Ahmed MA, Ahmad Y, Saad M. Drug resistant typhoid fever: A clinical challenge and a potential solution. Pakistan Journal Medical Sciences. 2024;40(7):1591.

28. Shaaban MT, Sallam O, Manikandan SK, Ahmed AA, Osaili TM, Hamad M, El-Keblawy A. Comparative morphological, genomic, and functional characterization of two newly isolated lytic caudoviricetes phages targeting Escherichia coli and Salmonella. Scientific Reports. 2026.

29. Yousefi MH, Wagemans J, Shekarforoush SS, Vallino M, Pozhydaieva N, Höfer K, Lavigne R, Hosseinzadeh S. Isolation and molecular characterization of the Salmonella typhimurium orphan phage Arash. Bmc Microbiology. 2023;23(1):297.

30. Bryan DW, Hudson LK, Wang J, Denes TG. Characterization of a diverse collection of Salmonella phages isolated from Tennessee wastewater. Phage. 2023;4(2):90-8.

31. Mirmiran SD, Li X, Li X, Qian P. Isolation and characterization of Salmonella phages for controlling bacterial infections. Frontiers in Veterinary Science. 2025;12:1695255.

32. Khan MA, Rahman SR. Use of phages to treat antimicrobial-resistant Salmonella infections in poultry. Veterinary Sciences. 2022;9(8):438.

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Published

2026-03-31

Issue

Section

Research Article

How to Cite

Bioprospecting and Evaluation of Lytic Bacteriophages against Extensively Drug-Resistant Salmonella Enterica Serovar Typhi from Diverse Biological Matrices. (2026). Pak-Euro Journal of Medical and Life Sciences, 9(1), 193-200. https://doi.org/10.31580/pjmls.v9i1.3478

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